Gallery of studied systems: Difference between revisions

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This page shows the systems studied with oxDNA or oxRNA model:
The systems studied with the oxDNA or oxRNA model with the links to the respective papers provided below:


==DNA systems==
==DNA systems==


<gallery mode="packed-overlay" widths=250px heights=180px >
<gallery mode="packed" widths=250px heights=180px >
Image:tweezers.png|''[http://prl.aps.org/abstract/PRL/v104/i17/e178101 DNA nanotweezers]''
Image:tweezers.png|''[http://prl.aps.org/abstract/PRL/v104/i17/e178101 DNA nanotweezers]''
Image:burntbridges.png|''[http://link.springer.com/article/10.1007%2Fs11047-013-9391-8 Burnt bridges motor]''  
Image:burntbridges.png|''[http://link.springer.com/article/10.1007%2Fs11047-013-9391-8 Burnt bridges motor]''  
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Image:kissing_hairpins.png|''Kissing hairpins (studied with [http://jcp.aip.org/resource/1/jcpsa6/v136/i21/p215102_s1 the average model] and [http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 the sequence-dependent model])''
Image:kissing_hairpins.png|''Kissing hairpins (studied with [http://jcp.aip.org/resource/1/jcpsa6/v136/i21/p215102_s1 the average model] and [http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 the sequence-dependent model])''
Image:longhpin.png|''[http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 Loop sequence effects on melting temperatures of hairpins]''
Image:longhpin.png|''[http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 Loop sequence effects on melting temperatures of hairpins]''
Image:sstack.png|''[http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 Heterogeneous stacking transition in single strands]''
Image:fray.png|''[http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 Duplex fraying]''
Image:strand_displace.png|''[http://nar.oxfordjournals.org/content/early/2013/09/07/nar.gkt801.full?sid=762d341b-b72f-4a09-9235-20ad3ef8aeed Biophysics of strand displacement]''
Image:strand_displace.png|''[http://nar.oxfordjournals.org/content/early/2013/09/07/nar.gkt801.full?sid=762d341b-b72f-4a09-9235-20ad3ef8aeed Biophysics of strand displacement]''
Image:over_stretch.png|''[http://jcp.aip.org/resource/1/jcpsa6/v138/i8/p085101_s1 Overstretching]''
Image:over_stretch.png|''[http://jcp.aip.org/resource/1/jcpsa6/v138/i8/p085101_s1 Overstretching]''
Image:cruci.png|''[http://pubs.acs.org/doi/abs/10.1021/jp3080755 DNA Cruciforms]''
Image:hybridization.png|''[http://nar.oxfordjournals.org/content/early/2013/08/08/nar.gkt687 Hybridization kinetics]''
Image:plecto.png|''[http://arxiv.org/abs/1404.2869 Plectonemes]''
Image:colorato.png|''[http://pubs.acs.org/doi/abs/10.1021/nn501138w Gels made of tetravalent DNA nanostars]''
Image:DNA_nematic.png|''[http://pubs.rsc.org/en/content/articlehtml/2012/sm/c2sm25845e Nematic phases formed by short DNA duplexes]''
</gallery>
==RNA systems==
<gallery mode="packed" widths=250px heights=180px >
Image:pseudo.png|''[http://arxiv.org/abs/1403.4180 Pseudoknot folding thermodynamics]''
Image:khp.png|''[http://arxiv.org/abs/1403.4180 Kissing complex]''
Image:nanoring.png|''[http://arxiv.org/abs/1403.4180 Nanoring]''
Image:unzip.png|''[http://arxiv.org/abs/1403.4180 Hairpin unzipping]''
Image:RNA_plectoneme.png|''[http://scitation.aip.org/content/aip/journal/jcp/143/24/10.1063/1.4933066 Plectonemes]''
</gallery>
</gallery>

Latest revision as of 19:09, 17 December 2015