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oxDNA is a simulation code that implements the coarse-grained DNA model introduced by T. E. Ouldridge, J. P. K. Doye and A. A. Louis. | oxDNA is a simulation code that implements the coarse-grained DNA model introduced by T. E. Ouldridge, J. P. K. Doye and A. A. Louis. | ||
{{cite journal|journal=J. Chem. Phys|author=T. E. Ouldridge|doi=10.1063/1.3552946|year=2011|volume=134|page=085101}}. The code implements Monte Carlo and Brownian Dynamics and can be used as a basis to numerically study DNA systems. The developers are F. Romano, P. Sulc and T. E. Ouldridge in the [http://physchem.ox.ac.uk/~doye/jon/ Doye] and [http://www-thphys.physics.ox.ac.uk/people/ArdLouis/ Louis] groups at the University of Oxford and L. Rovigatti in the [http://pacci.phys.uniroma1.it/?q=node/40 Sciortino] group in Rome. | {{cite journal|journal=J. Chem. Phys|author=T. E. Ouldridge|doi=10.1063/1.3552946|year=2011|volume=134|page=085101}}. The code implements Monte Carlo and Brownian Dynamics and can be used as a basis to numerically study DNA systems. The developers are F. Romano, P. Sulc and T. E. Ouldridge in the [http://physchem.ox.ac.uk/~doye/jon/ Doye] and [http://www-thphys.physics.ox.ac.uk/people/ArdLouis/ Louis] groups at the University of Oxford and L. Rovigatti in the [http://pacci.phys.uniroma1.it/?q=node/40 Sciortino] group in Rome. | ||
* [[Download and Installation]] | * [[Download and Installation]] | ||
* [[Model introduction]] | * [[Model introduction]] | ||
* [[Documentation]] | * [[Documentation]] | ||
* [[Examples]] | * [[Examples]] | ||
* [[Screenshots]] | * [[Screenshots]] | ||
== Acknowledgments == | == Acknowledgments == | ||
We thank our co-workers C. Matek, B. Snodin, W. Smith, etc... for having contributed bits of code. | We thank our co-workers C. Matek, B. Snodin, W. Smith, etc... for having contributed bits of code. | ||
== References == | == References == | ||
{{RefList}} | {{RefList}} | ||
Revision as of 16:24, 13 April 2012
oxDNA
oxDNA is a simulation code that implements the coarse-grained DNA model introduced by T. E. Ouldridge, J. P. K. Doye and A. A. Louis. {{#if:|}}{{#if:|}}. The code implements Monte Carlo and Brownian Dynamics and can be used as a basis to numerically study DNA systems. The developers are F. Romano, P. Sulc and T. E. Ouldridge in the Doye and Louis groups at the University of Oxford and L. Rovigatti in the Sciortino group in Rome.
Acknowledgments
We thank our co-workers C. Matek, B. Snodin, W. Smith, etc... for having contributed bits of code.