User contributions for Romano
Jump to navigation
Jump to search
19 March 2013
- 17:0617:06, 19 March 2013 diff hist 0 m Thermostat No edit summary
25 February 2013
- 13:0013:00, 25 February 2013 diff hist +246 Publications No edit summary
- 12:5512:55, 25 February 2013 diff hist +96 Publications No edit summary
12 December 2012
- 12:3512:35, 12 December 2012 diff hist 3,780 bytes Model introduction →Simulation units
- 12:3512:35, 12 December 2012 diff hist 3,780 bytes Model introduction →Simulation units
8 November 2012
- 17:5917:59, 8 November 2012 diff hist 964 bytes Screenshots and movies No edit summary
- 17:5817:58, 8 November 2012 diff hist empty File:Image dsdna.png No edit summary current
- 17:5717:57, 8 November 2012 diff hist empty File:Image ssdna.png No edit summary current
1 October 2012
- 23:2223:22, 1 October 2012 diff hist 1,994 bytes m License and Copyright →Referencing
- 23:2123:21, 1 October 2012 diff hist 2,178 bytes License and Copyright →Referencing
- 16:4516:45, 1 October 2012 diff hist 2,058 bytes Publications No edit summary
27 September 2012
- 09:5409:54, 27 September 2012 diff hist 1,968 bytes Publications No edit summary
24 September 2012
- 15:0215:02, 24 September 2012 diff hist 24,358 bytes m Documentation No edit summary
- 15:0015:00, 24 September 2012 diff hist 24,359 bytes m Documentation No edit summary
19 September 2012
- 18:5018:50, 19 September 2012 diff hist 1,796 bytes m Publications No edit summary
- 18:5018:50, 19 September 2012 diff hist 1,798 bytes m Publications No edit summary
- 18:5018:50, 19 September 2012 diff hist 1,793 bytes m Publications No edit summary
- 18:4918:49, 19 September 2012 diff hist 1,792 bytes m Publications No edit summary
18 September 2012
- 12:3512:35, 18 September 2012 diff hist 2,233 bytes m Thermostat No edit summary
- 12:3112:31, 18 September 2012 diff hist 2,233 bytes m Thermostat No edit summary
12 September 2012
- 18:2618:26, 12 September 2012 diff hist 1,796 bytes m Publications No edit summary
14 August 2012
- 22:1222:12, 14 August 2012 diff hist 2,397 bytes Download and Installation →Download
- 22:1122:11, 14 August 2012 diff hist 2,388 bytes Download and Installation →Download
- 21:5821:58, 14 August 2012 diff hist 2,397 bytes m Download and Installation →Download
- 21:5321:53, 14 August 2012 diff hist 2,375 bytes Download and Installation →Download
18 July 2012
- 15:5015:50, 18 July 2012 diff hist 229 bytes MediaWiki:Sidebar New page: * navigation ** mainpage|mainpage <!--** portal-url|portal--> <!--** currentevents-url|currentevents--> ** recentchanges-url|recentchanges ** randompage-url|randompage <!--** helppage|help... current
17 July 2012
- 23:2223:22, 17 July 2012 diff hist 1,729 bytes Publications No edit summary
5 July 2012
- 09:4709:47, 5 July 2012 diff hist 1,522 bytes Publications No edit summary
7 June 2012
- 14:3414:34, 7 June 2012 diff hist 1,212 bytes Publications No edit summary
18 May 2012
- 10:3510:35, 18 May 2012 diff hist 2,237 bytes m DsDNA persistence length No edit summary
16 May 2012
- 12:3712:37, 16 May 2012 diff hist 5,296 bytes Cadnano No edit summary
- 12:3612:36, 16 May 2012 diff hist 5,296 bytes m Cadnano No edit summary
- 12:3312:33, 16 May 2012 diff hist 5,296 bytes m Cadnano No edit summary
14 May 2012
- 15:5015:50, 14 May 2012 diff hist 5,320 bytes Cadnano No edit summary
- 15:3015:30, 14 May 2012 diff hist 4,725 bytes m Cadnano No edit summary
- 15:2915:29, 14 May 2012 diff hist 3,000 bytes m Features of the previous version →Supported features
- 15:2815:28, 14 May 2012 diff hist 3,000 bytes Features of the previous version →Supported features
- 12:3212:32, 14 May 2012 diff hist 4,710 bytes m Cadnano No edit summary
- 12:3212:32, 14 May 2012 diff hist empty File:Cadnano 1.png uploaded a new version of "Image:Cadnano 1.png" current
- 12:2712:27, 14 May 2012 diff hist 4,711 bytes m Cadnano No edit summary
- 12:2712:27, 14 May 2012 diff hist 4,725 bytes Cadnano No edit summary
- 12:1512:15, 14 May 2012 diff hist empty File:Cadnano 3.png No edit summary current
- 12:1112:11, 14 May 2012 diff hist empty File:Cadnano 2.png uploaded a new version of "Image:Cadnano 2.png" current
- 12:1012:10, 14 May 2012 diff hist empty File:Cadnano 2.png No edit summary
- 12:0412:04, 14 May 2012 diff hist empty File:Cadnano 1.png No edit summary
- 11:5911:59, 14 May 2012 diff hist 4,518 bytes Cadnano New page: Category:Examples == Cadnano == oxDNA includes an interface that allows origami designs generated with a design tool called candnano to be used in the model as starting configurations....
- 11:5811:58, 14 May 2012 diff hist 2,249 bytes m DsDNA persistence length No edit summary
- 11:5811:58, 14 May 2012 diff hist 2,247 bytes m DsDNA persistence length →Persistence length of a double-stranded DNA
19 April 2012
- 19:0919:09, 19 April 2012 diff hist 24,400 bytes Documentation →Analysis of configurations
- 19:0719:07, 19 April 2012 diff hist 2,321 bytes Download and Installation →Installation
- 19:0419:04, 19 April 2012 diff hist 1,972 bytes m Download and Installation →Operative system
- 19:0319:03, 19 April 2012 diff hist 5,483 bytes SsDNA Kuhn length →10-base ssDNA Kuhn length
- 19:0119:01, 19 April 2012 diff hist 3,163 bytes Model introduction No edit summary
- 19:0019:00, 19 April 2012 diff hist 5,431 bytes m SsDNA Kuhn length →10-base ssDNA Kuhn length
- 18:5118:51, 19 April 2012 diff hist 89 bytes m Category:Examples No edit summary
- 06:5906:59, 19 April 2012 diff hist 5,383 bytes m SsDNA Kuhn length No edit summary
- 06:5906:59, 19 April 2012 diff hist 5,381 bytes SsDNA Kuhn length No edit summary
- 06:4906:49, 19 April 2012 diff hist 4,924 bytes SsDNA Kuhn length No edit summary
- 06:4806:48, 19 April 2012 diff hist 4,902 bytes m SsDNA Kuhn length →10-base ssDNA persistence length
- 06:4806:48, 19 April 2012 diff hist 4,903 bytes SsDNA Kuhn length No edit summary
- 06:4706:47, 19 April 2012 diff hist 4,902 bytes SsDNA Kuhn length No edit summary
- 06:4706:47, 19 April 2012 diff hist 4,902 bytes SsDNA Kuhn length New page: In this example we will compute the kuhn length strand of ssDNA with two different lengths: 10 and 30 nucleotides. Given the simplicity of the system, the computation required is of the or...
- 06:4106:41, 19 April 2012 diff hist 112 bytes m Category:Examples No edit summary
18 April 2012
- 15:5515:55, 18 April 2012 diff hist 711 bytes m Contact information No edit summary
- 09:5209:52, 18 April 2012 diff hist 1,118 bytes m Publications No edit summary
- 02:5002:50, 18 April 2012 diff hist 2,206 bytes Thermostat New page: he thermostat implemented in the simulation code is a simple thermostat that emulates Brownian dynamics. The system is evolved integrating Newton's equations of motion ('NVE' ensemble) for...
- 02:4802:48, 18 April 2012 diff hist 24,126 bytes m Documentation →Molecular dynamics simulations options
- 02:4702:47, 18 April 2012 diff hist 24,080 bytes m Documentation →Usage
- 02:2102:21, 18 April 2012 diff hist 2,667 bytes Features of the previous version No edit summary
- 01:5901:59, 18 April 2012 diff hist 23,438 bytes m Documentation →Generation of initial configurations
- 01:3701:37, 18 April 2012 diff hist 6,773 bytes m Pseudoknot formation →Introduction
- 01:3601:36, 18 April 2012 diff hist 6,784 bytes Pseudoknot formation No edit summary
- 01:3201:32, 18 April 2012 diff hist 23,440 bytes m Documentation →External Forces
- 01:3101:31, 18 April 2012 diff hist 23,430 bytes m Documentation →External Forces
- 01:2501:25, 18 April 2012 diff hist 23,137 bytes Documentation No edit summary
17 April 2012
- 23:5323:53, 17 April 2012 diff hist 16,880 bytes Documentation →Geometry of the Model
- 23:4923:49, 17 April 2012 diff hist 6,745 bytes Pseudoknot formation →Option 3
- 23:2923:29, 17 April 2012 diff hist 6,827 bytes Pseudoknot formation No edit summary
- 23:2223:22, 17 April 2012 diff hist 16,890 bytes Documentation →Analysis of configurations
- 20:3220:32, 17 April 2012 diff hist 16,300 bytes Documentation No edit summary
- 17:2517:25, 17 April 2012 diff hist 1,888 bytes m License and Copyright No edit summary
- 15:4315:43, 17 April 2012 diff hist 1,888 bytes m License and Copyright No edit summary
- 15:4315:43, 17 April 2012 diff hist 1,887 bytes m License and Copyright No edit summary
- 15:4215:42, 17 April 2012 diff hist 1,972 bytes m Download and Installation →Operative system
- 15:3915:39, 17 April 2012 diff hist 6,811 bytes Pseudoknot formation →Option 3
- 15:3915:39, 17 April 2012 diff hist 6,813 bytes m Pseudoknot formation →Option 3
- 15:3915:39, 17 April 2012 diff hist 6,814 bytes m Pseudoknot formation →Option 3
- 15:3815:38, 17 April 2012 diff hist 6,809 bytes m Pseudoknot formation →Option 2
- 15:3815:38, 17 April 2012 diff hist 6,815 bytes m Pseudoknot formation →Option 1
- 15:3815:38, 17 April 2012 diff hist 1,349 bytes m DsDNA persistence length →Persistence length of a double-stranded DNA
- 15:3715:37, 17 April 2012 diff hist 14,503 bytes m Documentation →pdb format
- 15:3715:37, 17 April 2012 diff hist 14,507 bytes m Documentation →xyz format
- 15:3615:36, 17 April 2012 diff hist 14,457 bytes m Documentation →Generation of initial configurations
- 15:3615:36, 17 April 2012 diff hist 14,462 bytes m Documentation →Topology file
- 15:3615:36, 17 April 2012 diff hist 14,470 bytes m Documentation →Configuration file
- 15:3515:35, 17 April 2012 diff hist 14,474 bytes m Documentation →Usage
- 15:3515:35, 17 April 2012 diff hist 2,651 bytes m Features of the previous version →Supported features
- 15:3315:33, 17 April 2012 diff hist 1,970 bytes m Download and Installation →Installation
- 15:3315:33, 17 April 2012 diff hist 1,757 bytes License and Copyright No edit summary
- 15:3215:32, 17 April 2012 diff hist 1,720 bytes License and Copyright New page: oxDNA is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the Lic...
- 15:2115:21, 17 April 2012 diff hist 1,656 bytes m Main Page →oxDNA
- 15:1415:14, 17 April 2012 diff hist 1,627 bytes m Main Page →Acknowledgments
- 14:5414:54, 17 April 2012 diff hist 1,970 bytes Download and Installation No edit summary
- 14:2114:21, 17 April 2012 diff hist 1,959 bytes m Download and Installation →Download
- 14:1514:15, 17 April 2012 diff hist 1,119 bytes Publications No edit summary
- 14:1314:13, 17 April 2012 diff hist 14,477 bytes Documentation →Generation of initial configurations
- 14:1014:10, 17 April 2012 diff hist 14,359 bytes m Documentation →Topology file
- 14:0814:08, 17 April 2012 diff hist 14,332 bytes m Documentation →Topology file
- 14:0714:07, 17 April 2012 diff hist 14,255 bytes Documentation →Topology file
- 13:5213:52, 17 April 2012 diff hist 13,373 bytes m Documentation →Generation of initial configurations
- 13:5113:51, 17 April 2012 diff hist 13,366 bytes m Documentation →Generation of initial configurations
- 13:4913:49, 17 April 2012 diff hist 13,136 bytes m Documentation →Configuration file
- 13:4913:49, 17 April 2012 diff hist 13,116 bytes Documentation →Configuration file
- 13:4513:45, 17 April 2012 diff hist 1,625 bytes m Main Page No edit summary
- 13:4513:45, 17 April 2012 diff hist 1,626 bytes Main Page No edit summary
- 13:4513:45, 17 April 2012 diff hist 1,627 bytes Main Page →References
- 13:4513:45, 17 April 2012 diff hist 1,770 bytes Main Page →oxDNA
- 13:3913:39, 17 April 2012 diff hist 6,144 bytes m Template:Cite journal 1 revision(s) current
- 13:3813:38, 17 April 2012 diff hist 778 bytes m Template:Reflist 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 234 bytes m Template:Yes 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 742 bytes m Template:Tlx 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 1,147 bytes m Template:Shortcut 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 30 bytes m Template:See 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 140 bytes m Template:Rellink 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 15,468 bytes m Template:Reflist/doc 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 99 bytes m Template:Refend 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 640 bytes m Template:Refbegin 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 479 bytes m Template:Partial 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist empty m Template:Ombox/core 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist empty m Template:Ombox 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 232 bytes m Template:No 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 912 bytes m Template:Markup/row 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 2,100 bytes m Template:Markup 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 1,230 bytes m Template:Main 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 49 bytes m Template:Ldr 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 1,010 bytes m Template:High-risk 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 54 bytes m Template:Hidden end 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 1,705 bytes m Template:Hidden begin 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 76 bytes m Template:Hatnote 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 864 bytes m Template:Further 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 302 bytes m Template:Fake heading 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 240 bytes m Template:Column-width 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 81 bytes m Template:Clear 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 5,377 bytes m Template:Cite web 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 124 bytes m Template:Cite.php 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 1,077 bytes m Template:CSS list-style-type values/core 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 2,573 bytes m Template:CSS list-style-type values 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 682 bytes m Template:CSS3 multiple column layout 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 750 bytes m Template:Anchor 1 revision(s) current
- 13:3713:37, 17 April 2012 diff hist 40 bytes m Template:! 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 171 bytes m Template:· 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 2,287 bytes m Template:Wikipedia referencing 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 477 bytes m Template:UF-COinS 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 400 bytes m Template:Transclude 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 76 bytes m Template:Tl 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 741 bytes m Template:Template redirects 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 435 bytes m Template:Template other 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 484 bytes m Template:Tag 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 117 bytes m Template:Str left 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 143 bytes m Template:Small 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 88 bytes m Template:Sfnote 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 541 bytes m Template:Selfref 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 197 bytes m Template:Purge 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 3,278 bytes m Template:Pp-template 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 6,834 bytes m Template:Pp-meta 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 137 bytes m Template:Paren 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 238 bytes m Template:Para 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 79 bytes m Template:Only in print 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 19,341 bytes m Template:Navbox 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 1,111 bytes m Template:Navbar 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist empty m Template:Hide in print 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 1,344 bytes m Template:Fmbox 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 25 bytes m Template:Dot 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 1,405 bytes m Template:Documentation subpage 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 232 bytes m Template:Documentation/template page 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 641 bytes m Template:Documentation/start box2 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 1,785 bytes m Template:Documentation/start box 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 880 bytes m Template:Documentation/end box2 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 4,169 bytes m Template:Documentation/end box 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 302 bytes m Template:Documentation/docspace 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist empty m Template:Documentation 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 51 bytes m Template:Csdoc 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 150 bytes m Template:Code 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 15,524 bytes m Template:Cite journal/doc 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 219 bytes m Template:Citation Style documentation/volume 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 2,283 bytes m Template:Citation Style documentation/url 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 709 bytes m Template:Citation Style documentation/title quotes 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 296 bytes m Template:Citation Style documentation/syntax 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 145 bytes m Template:Citation Style documentation/series 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 263 bytes m Template:Citation Style documentation/sep period 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 719 bytes m Template:Citation Style documentation/ref 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 203 bytes m Template:Citation Style documentation/quote 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 331 bytes m Template:Citation Style documentation/publisher 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 1,059 bytes m Template:Citation Style documentation/pages periodical 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 107 bytes m Template:Citation Style documentation/others 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 289 bytes m Template:Citation Style documentation/lay 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 192 bytes m Template:Citation Style documentation/language 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 523 bytes m Template:Citation Style documentation/journal 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 2,455 bytes m Template:Citation Style documentation/id2 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 141 bytes m Template:Citation Style documentation/id1 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 1,114 bytes m Template:Citation Style documentation/editor 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 176 bytes m Template:Citation Style documentation/edition 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 2,382 bytes m Template:Citation Style documentation/display 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 572 bytes m Template:Citation Style documentation/date 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 447 bytes m Template:Citation Style documentation/coins 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 1,146 bytes m Template:Citation Style documentation/author 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 204 bytes m Template:Citation Style documentation 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 1,774 bytes m Template:Citation Style 1 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 535 bytes m Template:Citation/make link 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist empty m Template:Citation/identifier 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist empty m Template:Citation/core 1 revision(s) current
- 13:3513:35, 17 April 2012 diff hist 43 bytes m Template:= 1 revision(s) current
- 13:3113:31, 17 April 2012 diff hist 1,345 bytes m DsDNA persistence length →Persistence length of a double-stranded DNA
- 13:1813:18, 17 April 2012 diff hist 12,858 bytes Documentation →Configuration file
- 13:1813:18, 17 April 2012 diff hist 12,856 bytes Documentation →Configuration and topology files
- 13:1013:10, 17 April 2012 diff hist 2,656 bytes m Features of the previous version →Supported features
- 12:0012:00, 17 April 2012 diff hist 12,156 bytes Documentation →Configuration and topology files
- 11:2311:23, 17 April 2012 diff hist 2,654 bytes m Features of the previous version →Supported features
- 11:2211:22, 17 April 2012 diff hist 11,871 bytes m Documentation →Generation of input files
- 11:2211:22, 17 April 2012 diff hist 11,860 bytes m Documentation →Generation of input files
- 11:2111:21, 17 April 2012 diff hist 11,864 bytes m Documentation →Generation of input files
- 11:2111:21, 17 April 2012 diff hist 11,863 bytes Documentation →Generation of input files
- 11:1511:15, 17 April 2012 diff hist 11,490 bytes m Documentation →Generation of input files
- 11:1411:14, 17 April 2012 diff hist 11,474 bytes Documentation →Generation of input files
- 11:1311:13, 17 April 2012 diff hist 2,643 bytes Features of the previous version →Supported features
- 11:1211:12, 17 April 2012 diff hist 10,926 bytes Documentation →Configuration and topology files
- 11:0611:06, 17 April 2012 diff hist 10,783 bytes Documentation No edit summary
- 10:5710:57, 17 April 2012 diff hist 10,745 bytes m Documentation →pdb format
- 10:5610:56, 17 April 2012 diff hist 10,746 bytes m Documentation →xyz format
- 10:5510:55, 17 April 2012 diff hist 10,793 bytes m Documentation →Visualisation of structures
- 10:5310:53, 17 April 2012 diff hist 2,773 bytes m Features of the previous version →Supported features
- 10:5310:53, 17 April 2012 diff hist 10,792 bytes m Documentation →pdb format
- 10:5210:52, 17 April 2012 diff hist 2,699 bytes m Features of the previous version →Supported features
- 10:5010:50, 17 April 2012 diff hist 10,792 bytes m Documentation →pdb format
- 09:5909:59, 17 April 2012 diff hist 2,653 bytes m Features of the previous version →Supported features
- 09:5709:57, 17 April 2012 diff hist 10,764 bytes Documentation →xyz format
- 09:5609:56, 17 April 2012 diff hist 10,764 bytes m Documentation →xyz format
- 09:5309:53, 17 April 2012 diff hist 10,764 bytes Documentation →Visualisation of structures
- 01:4301:43, 17 April 2012 diff hist 10,762 bytes Documentation No edit summary
16 April 2012
- 17:5917:59, 16 April 2012 diff hist 1,959 bytes Download and Installation →Installation
- 17:5717:57, 16 April 2012 diff hist 1,710 bytes Download and Installation No edit summary
- 17:5617:56, 16 April 2012 diff hist 2,658 bytes Features of the previous version →Supported features
- 17:5517:55, 16 April 2012 diff hist 2,658 bytes Features of the previous version →Supported features
- 17:5517:55, 16 April 2012 diff hist 2,657 bytes Features of the previous version →Unsupported features
- 17:5517:55, 16 April 2012 diff hist 2,657 bytes Features of the previous version →Unsupported features
- 17:4917:49, 16 April 2012 diff hist 2,263 bytes Features of the previous version →Supported features
- 17:4817:48, 16 April 2012 diff hist 2,264 bytes Features of the previous version →Supported features
- 17:4817:48, 16 April 2012 diff hist 2,263 bytes Features of the previous version No edit summary
- 17:3417:34, 16 April 2012 diff hist 1,771 bytes Features of the previous version →Supported features
- 17:2217:22, 16 April 2012 diff hist 1,164 bytes Features of the previous version No edit summary
- 17:1517:15, 16 April 2012 diff hist 349 bytes Features of the previous version No edit summary
- 17:1517:15, 16 April 2012 diff hist 348 bytes Features of the previous version No edit summary
- 17:1417:14, 16 April 2012 diff hist 346 bytes Features of the previous version New page: Since oxDNA is still in its early stages of development, we release the code as-is with all the features enabled but we only give support to some of them. In particular, we provid [[Exampl...
- 17:1017:10, 16 April 2012 diff hist 1,710 bytes Main Page →References
- 17:0817:08, 16 April 2012 diff hist 1,699 bytes Download and Installation →Download
- 17:0617:06, 16 April 2012 diff hist 1,741 bytes Main Page →oxDNA
- 17:0617:06, 16 April 2012 diff hist 1,673 bytes Download and Installation No edit summary
- 17:0617:06, 16 April 2012 diff hist 1,673 bytes Download and Installation No edit summary
- 17:0517:05, 16 April 2012 diff hist 1,629 bytes Download and Installation No edit summary
- 16:5716:57, 16 April 2012 diff hist 6,798 bytes Pseudoknot formation No edit summary
- 16:4616:46, 16 April 2012 diff hist 1,218 bytes Download and Installation →Download
- 16:4516:45, 16 April 2012 diff hist 1,168 bytes Download and Installation →Operative system
- 16:4516:45, 16 April 2012 diff hist 1,168 bytes Download and Installation →Compiler
- 16:4216:42, 16 April 2012 diff hist 1,031 bytes Download and Installation →Operative system
- 16:4216:42, 16 April 2012 diff hist 1,030 bytes Download and Installation →Requirements
- 16:4116:41, 16 April 2012 diff hist 6,776 bytes Pseudoknot formation →Option 3
- 16:4016:40, 16 April 2012 diff hist 6,775 bytes Pseudoknot formation No edit summary
- 16:3716:37, 16 April 2012 diff hist 683 bytes Download and Installation →Requirements
- 16:3616:36, 16 April 2012 diff hist 600 bytes Download and Installation New page: ==Requirements== oxDNA compilation has been thoroughly tested with gcc >= 4.1.x and icpc >= 10. oxDNA does not require any external library. If you ==Download== The source package can be...
- 16:3416:34, 16 April 2012 diff hist 6,751 bytes Pseudoknot formation No edit summary
- 16:2816:28, 16 April 2012 diff hist 6,723 bytes Pseudoknot formation New page: One of the features of the model implemented in oxDNA is that it has a three-dimensional structure, so that it automatically incorporates topological effects (see Flavio's paper). In this ...
- 16:2516:25, 16 April 2012 diff hist 90 bytes Category:Examples No edit summary
- 16:2016:20, 16 April 2012 diff hist 88 bytes Category:Examples No edit summary
- 13:3913:39, 16 April 2012 diff hist 981 bytes m Main Page No edit summary
- 13:3913:39, 16 April 2012 diff hist 982 bytes Main Page →oxDNA
- 13:3813:38, 16 April 2012 diff hist 983 bytes Main Page →Acknowledgments
- 13:3713:37, 16 April 2012 diff hist 929 bytes Publications No edit summary
- 13:3613:36, 16 April 2012 diff hist 722 bytes Publications No edit summary
- 13:3613:36, 16 April 2012 diff hist 710 bytes Publications No edit summary
- 13:3413:34, 16 April 2012 diff hist 694 bytes Publications No edit summary
- 13:3313:33, 16 April 2012 diff hist 482 bytes Publications New page: T.E. Ouldridge, A.A. Louis and J.P.K. Doye, J. Chem. Phys, 134, 085101 (2011) [http://link.aip.org/link/?JCP/134/085101 Structural, mechanical and thermodynamic properties of a coarse-grai...
- 13:3013:30, 16 April 2012 diff hist 988 bytes Main Page →oxDNA
15 April 2012
- 11:5911:59, 15 April 2012 diff hist empty File:Image.png uploaded a new version of "Image:Image.png" current
13 April 2012
- 21:5921:59, 13 April 2012 diff hist 7,498 bytes Documentation →Simulation options
- 21:5621:56, 13 April 2012 diff hist 7,430 bytes m Documentation →Simulation options
- 20:0620:06, 13 April 2012 diff hist 7,429 bytes Documentation →Output files
- 20:0520:05, 13 April 2012 diff hist 7,583 bytes Documentation →Output files
- 17:4517:45, 13 April 2012 diff hist 5,089 bytes m Hairpin formation →Results
- 17:4517:45, 13 April 2012 diff hist 5,099 bytes m Hairpin formation →Introduction
- 17:4417:44, 13 April 2012 diff hist 5,097 bytes m Hairpin formation No edit summary
- 17:4117:41, 13 April 2012 diff hist 4,207 bytes Hairpin formation No edit summary
- 17:3917:39, 13 April 2012 diff hist 4,192 bytes Hairpin formation →Introduction
- 17:3817:38, 13 April 2012 diff hist 4,178 bytes Hairpin formation →Introduction
- 17:3717:37, 13 April 2012 diff hist empty File:Histo MD.png No edit summary
- 17:3617:36, 13 April 2012 diff hist 4,181 bytes m Hairpin formation No edit summary
- 17:3217:32, 13 April 2012 diff hist 967 bytes Main Page →oxDNA
- 17:2517:25, 13 April 2012 diff hist 67 bytes Category:Examples New page: Here we put examples on how to use the code to study simple systems
- 17:2317:23, 13 April 2012 diff hist 40 bytes DsDNA persistence length No edit summary
- 17:2317:23, 13 April 2012 diff hist 18 bytes DsDNA persistence length New page: = Petr's example =
- 17:2117:21, 13 April 2012 diff hist 2,981 bytes Hairpin formation No edit summary
- 17:2117:21, 13 April 2012 diff hist 31 bytes Examples Examples moved to Hairpin formation current
- 17:2117:21, 13 April 2012 diff hist 2,959 bytes m Hairpin formation Examples moved to Hairpin formation
- 17:0717:07, 13 April 2012 diff hist 2,959 bytes Hairpin formation New page: = Hairpin formation = == Introduction == In this example, you will simulate a single strand of length 18 and sequence <tt>GCGTTGCTTCTCCAACGC</tt> at 334 K (~61 C) in three different ways:...
- 17:0617:06, 13 April 2012 diff hist 7,373 bytes Documentation No edit summary
- 17:0417:04, 13 April 2012 diff hist 7,409 bytes Documentation →Compilation options
- 16:5716:57, 13 April 2012 diff hist 7,419 bytes Documentation →Molecular dynamics simulations options
- 16:5616:56, 13 April 2012 diff hist 7,423 bytes Documentation →Input/output
- 16:5616:56, 13 April 2012 diff hist 7,423 bytes Documentation →Input/output
- 16:5116:51, 13 April 2012 diff hist 7,463 bytes Documentation →Simulation options
- 16:4816:48, 13 April 2012 diff hist 7,478 bytes Documentation →Simulation options
- 16:4816:48, 13 April 2012 diff hist 7,508 bytes Documentation →Simulation options
- 16:4716:47, 13 April 2012 diff hist 7,514 bytes Documentation →Simulation options
- 16:4716:47, 13 April 2012 diff hist 7,518 bytes Documentation →Simulation options
- 16:4516:45, 13 April 2012 diff hist 7,521 bytes Documentation →Simulation options
- 16:4516:45, 13 April 2012 diff hist 7,520 bytes Documentation →Simulation options
- 16:4216:42, 13 April 2012 diff hist 7,530 bytes Documentation →Simulation options
- 16:4116:41, 13 April 2012 diff hist 7,528 bytes Documentation →Simulation options
- 16:4116:41, 13 April 2012 diff hist 7,537 bytes Documentation →Simulation options
- 16:4016:40, 13 April 2012 diff hist 7,538 bytes Documentation →Generic options
- 16:4016:40, 13 April 2012 diff hist 7,533 bytes Documentation →Generic options
- 16:3716:37, 13 April 2012 diff hist 7,551 bytes Documentation →Simulation options
- 16:3616:36, 13 April 2012 diff hist 7,808 bytes Documentation →Generic options
- 16:3516:35, 13 April 2012 diff hist 7,805 bytes Documentation →Generic options
- 16:3516:35, 13 April 2012 diff hist 7,824 bytes Documentation →Generic options
- 16:3416:34, 13 April 2012 diff hist 7,817 bytes Documentation →Generic options
- 16:3316:33, 13 April 2012 diff hist 8,659 bytes Documentation →Compilation options
- 16:3216:32, 13 April 2012 diff hist 8,901 bytes Documentation →Generic options
- 16:2616:26, 13 April 2012 diff hist 8,906 bytes Documentation →Output files
- 16:2416:24, 13 April 2012 diff hist 948 bytes Main Page No edit summary
- 16:2316:23, 13 April 2012 diff hist 955 bytes Main Page No edit summary
- 16:2216:22, 13 April 2012 diff hist 992 bytes Main Page No edit summary
- 16:2216:22, 13 April 2012 diff hist 987 bytes Main Page No edit summary
- 16:1916:19, 13 April 2012 diff hist 8,713 bytes Documentation →Simulation options
- 16:1916:19, 13 April 2012 diff hist 287 bytes Model introduction New page: The model is discussed in detail in: T.E. Ouldridge, A.A. Louis and J.P.K. Doye, J. Chem. Phys, 134, 085101 (2011) [http://link.aip.org/link/?JCP/134/085101 Structural, mechanical and the...
- 16:1716:17, 13 April 2012 diff hist 8,743 bytes Documentation No edit summary
- 16:1616:16, 13 April 2012 diff hist 862 bytes Main Page No edit summary
- 16:1216:12, 13 April 2012 diff hist empty Template:RefList Removing all content from page current
- 16:1216:12, 13 April 2012 diff hist empty Template:Citation/core Removing all content from page
- 16:1216:12, 13 April 2012 diff hist empty Template:Citation/identifier Removing all content from page
- 16:1216:12, 13 April 2012 diff hist empty Template:Hide in print Removing all content from page
- 16:1216:12, 13 April 2012 diff hist empty Template:Documentation Removing all content from page
- 16:1216:12, 13 April 2012 diff hist empty Template:Template sandbox notice Removing all content from page current
- 16:1116:11, 13 April 2012 diff hist empty Template:Loop Removing all content from page current
- 16:1116:11, 13 April 2012 diff hist empty Template:Ombox Removing all content from page
- 16:1116:11, 13 April 2012 diff hist empty Template:Ombox/core Removing all content from page
- 16:0916:09, 13 April 2012 diff hist 1,871 bytes Template:Ombox/core New page: <table class="plainlinks ombox {{#ifeq:{{{small}}}|yes|mbox-small}} {{#switch:{{{type|}}} | speedy = ombox-speedy | delete = ombox-delete | content = ombox-content | style ...
- 16:0916:09, 13 April 2012 diff hist 723 bytes Template:Ombox New page: {{#ifeq:{{{small|}}}|yes | {{ombox/core | small = yes | type = {{{type|}}} | image = {{#if:{{{smallimage|}}}| {{{smallimage}}} | {{{image|}}} }} | imageright = {{#if:{{{smallimage...
- 16:0916:09, 13 April 2012 diff hist 5,927 bytes Template:Loop New page: <includeonly><!-- -->{{#ifexpr:{{{1}}}>000|{{{2}}}}}<!-- -->{{#ifexpr:{{{1}}}>001|{{{2}}}}}<!-- -->{{#ifexpr:{{{1}}}>002|{{{2}}}}}<!-- -->{{#ifexpr:{{{1}}}>003|{{{2}}}}}<!-- -->{{#ifexpr:{...
- 16:0816:08, 13 April 2012 diff hist 1,070 bytes Template:Template sandbox notice New page: {{#ifexpr:0<noinclude>1</noinclude>+{{#ifeq:{{lc:{{SUBPAGENAME}}}}|{{lc:{{{subpage-name|sandbox}}}}} |1 |0 }} |{{ombox |image = 50px|alt=|link= |text = This...
- 16:0716:07, 13 April 2012 diff hist 2,382 bytes Template:Documentation New page: <!-- Automatically add {{template sandbox notice}} when on a /sandbox page. -->{{#ifeq: {{SUBPAGENAME}} | sandbox | <div style="clear: both;"></div>{{template sandbox notice|{{{livepage|...
- 16:0716:07, 13 April 2012 diff hist 109 bytes Template:Hide in print New page: <includeonly>{{{1|}}}</includeonly><noinclude> {{documentation}} ! </noinclude>
- 16:0616:06, 13 April 2012 diff hist 5,050 bytes Template:Citation/identifier New page: {{#switch:{{{identifier}}} |arxiv={{hide in print |arXiv:[http://arxiv.org/abs/{{{input1|}}} {{#tag:nowiki|{{{input1|}}}}}] }}<!-- -->{{only in print |a...
- 16:0416:04, 13 April 2012 diff hist 26,474 bytes Template:Citation/core New page: <span class="citation {{{Citation class|{{{Citation type|}}}}}}" {{ #switch:{{{Ref|}}} ||none = |#default = id="{{anchorencode:{{{Ref}}}}}" |harv = {{#if:{{{Surname1|}}}{{{EditorSu...
- 16:0116:01, 13 April 2012 diff hist 702 bytes Template:RefList No edit summary
- 16:0016:00, 13 April 2012 diff hist 711 bytes Template:RefList No edit summary
- 16:0016:00, 13 April 2012 diff hist 778 bytes Template:RefList No edit summary
- 15:5715:57, 13 April 2012 diff hist 591 bytes Template:RefList New page: <div class="reflist references <!-- -->{{#if: {{{1|}}} | {{#iferror: {{#ifexpr: {{{1|1}}} > 1 }} | references-column-width | references-column-count references-column-cou...
- 15:5615:56, 13 April 2012 diff hist 840 bytes Main Page No edit summary
- 15:5315:53, 13 April 2012 diff hist 8,735 bytes Documentation →Compilation options
- 15:5215:52, 13 April 2012 diff hist 8,712 bytes Documentation No edit summary
- 15:4215:42, 13 April 2012 diff hist 8,709 bytes Documentation New page: BLA BLA Documentation introduction ==MAKE OPTIONS== To compile oxDNA you have to change the first rows in the makefile to match your CUDA installation and to specify the architecture (64...
- 15:1115:11, 13 April 2012 diff hist 481 bytes Main Page No edit summary
- 15:0015:00, 13 April 2012 diff hist 512 bytes Main Page No edit summary