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16 April 2012
- 16:4216:42, 16 April 2012 diff hist 1,031 bytes Download and Installation →Operative system
- 16:4216:42, 16 April 2012 diff hist 1,030 bytes Download and Installation →Requirements
- 16:4116:41, 16 April 2012 diff hist 6,776 bytes Pseudoknot formation →Option 3
- 16:4016:40, 16 April 2012 diff hist 6,775 bytes Pseudoknot formation No edit summary
- 16:3716:37, 16 April 2012 diff hist 683 bytes Download and Installation →Requirements
- 16:3616:36, 16 April 2012 diff hist 600 bytes Download and Installation New page: ==Requirements== oxDNA compilation has been thoroughly tested with gcc >= 4.1.x and icpc >= 10. oxDNA does not require any external library. If you ==Download== The source package can be...
- 16:3416:34, 16 April 2012 diff hist 6,751 bytes Pseudoknot formation No edit summary
- 16:2816:28, 16 April 2012 diff hist 6,723 bytes Pseudoknot formation New page: One of the features of the model implemented in oxDNA is that it has a three-dimensional structure, so that it automatically incorporates topological effects (see Flavio's paper). In this ...
- 16:2516:25, 16 April 2012 diff hist 90 bytes Category:Examples No edit summary
- 16:2016:20, 16 April 2012 diff hist 88 bytes Category:Examples No edit summary
- 13:3913:39, 16 April 2012 diff hist 981 bytes m Main Page No edit summary
- 13:3913:39, 16 April 2012 diff hist 982 bytes Main Page →oxDNA
- 13:3813:38, 16 April 2012 diff hist 983 bytes Main Page →Acknowledgments
- 13:3713:37, 16 April 2012 diff hist 929 bytes Publications No edit summary
- 13:3613:36, 16 April 2012 diff hist 722 bytes Publications No edit summary
- 13:3613:36, 16 April 2012 diff hist 710 bytes Publications No edit summary
- 13:3413:34, 16 April 2012 diff hist 694 bytes Publications No edit summary
- 13:3313:33, 16 April 2012 diff hist 482 bytes Publications New page: T.E. Ouldridge, A.A. Louis and J.P.K. Doye, J. Chem. Phys, 134, 085101 (2011) [http://link.aip.org/link/?JCP/134/085101 Structural, mechanical and thermodynamic properties of a coarse-grai...
- 13:3013:30, 16 April 2012 diff hist 988 bytes Main Page →oxDNA
15 April 2012
- 11:5911:59, 15 April 2012 diff hist empty File:Image.png uploaded a new version of "Image:Image.png" current
13 April 2012
- 21:5921:59, 13 April 2012 diff hist 7,498 bytes Documentation →Simulation options
- 21:5621:56, 13 April 2012 diff hist 7,430 bytes m Documentation →Simulation options
- 20:0620:06, 13 April 2012 diff hist 7,429 bytes Documentation →Output files
- 20:0520:05, 13 April 2012 diff hist 7,583 bytes Documentation →Output files
- 17:4517:45, 13 April 2012 diff hist 5,089 bytes m Hairpin formation →Results
- 17:4517:45, 13 April 2012 diff hist 5,099 bytes m Hairpin formation →Introduction
- 17:4417:44, 13 April 2012 diff hist 5,097 bytes m Hairpin formation No edit summary
- 17:4117:41, 13 April 2012 diff hist 4,207 bytes Hairpin formation No edit summary
- 17:3917:39, 13 April 2012 diff hist 4,192 bytes Hairpin formation →Introduction
- 17:3817:38, 13 April 2012 diff hist 4,178 bytes Hairpin formation →Introduction
- 17:3717:37, 13 April 2012 diff hist empty File:Histo MD.png No edit summary
- 17:3617:36, 13 April 2012 diff hist 4,181 bytes m Hairpin formation No edit summary
- 17:3217:32, 13 April 2012 diff hist 967 bytes Main Page →oxDNA
- 17:2517:25, 13 April 2012 diff hist 67 bytes Category:Examples New page: Here we put examples on how to use the code to study simple systems
- 17:2317:23, 13 April 2012 diff hist 40 bytes DsDNA persistence length No edit summary
- 17:2317:23, 13 April 2012 diff hist 18 bytes DsDNA persistence length New page: = Petr's example =
- 17:2117:21, 13 April 2012 diff hist 2,981 bytes Hairpin formation No edit summary
- 17:2117:21, 13 April 2012 diff hist 31 bytes Examples Examples moved to Hairpin formation current
- 17:2117:21, 13 April 2012 diff hist 2,959 bytes m Hairpin formation Examples moved to Hairpin formation
- 17:0717:07, 13 April 2012 diff hist 2,959 bytes Hairpin formation New page: = Hairpin formation = == Introduction == In this example, you will simulate a single strand of length 18 and sequence <tt>GCGTTGCTTCTCCAACGC</tt> at 334 K (~61 C) in three different ways:...
- 17:0617:06, 13 April 2012 diff hist 7,373 bytes Documentation No edit summary
- 17:0417:04, 13 April 2012 diff hist 7,409 bytes Documentation →Compilation options
- 16:5716:57, 13 April 2012 diff hist 7,419 bytes Documentation →Molecular dynamics simulations options
- 16:5616:56, 13 April 2012 diff hist 7,423 bytes Documentation →Input/output
- 16:5616:56, 13 April 2012 diff hist 7,423 bytes Documentation →Input/output
- 16:5116:51, 13 April 2012 diff hist 7,463 bytes Documentation →Simulation options
- 16:4816:48, 13 April 2012 diff hist 7,478 bytes Documentation →Simulation options
- 16:4816:48, 13 April 2012 diff hist 7,508 bytes Documentation →Simulation options
- 16:4716:47, 13 April 2012 diff hist 7,514 bytes Documentation →Simulation options
- 16:4716:47, 13 April 2012 diff hist 7,518 bytes Documentation →Simulation options
- 16:4516:45, 13 April 2012 diff hist 7,521 bytes Documentation →Simulation options
- 16:4516:45, 13 April 2012 diff hist 7,520 bytes Documentation →Simulation options
- 16:4216:42, 13 April 2012 diff hist 7,530 bytes Documentation →Simulation options
- 16:4116:41, 13 April 2012 diff hist 7,528 bytes Documentation →Simulation options
- 16:4116:41, 13 April 2012 diff hist 7,537 bytes Documentation →Simulation options
- 16:4016:40, 13 April 2012 diff hist 7,538 bytes Documentation →Generic options
- 16:4016:40, 13 April 2012 diff hist 7,533 bytes Documentation →Generic options
- 16:3716:37, 13 April 2012 diff hist 7,551 bytes Documentation →Simulation options
- 16:3616:36, 13 April 2012 diff hist 7,808 bytes Documentation →Generic options
- 16:3516:35, 13 April 2012 diff hist 7,805 bytes Documentation →Generic options
- 16:3516:35, 13 April 2012 diff hist 7,824 bytes Documentation →Generic options
- 16:3416:34, 13 April 2012 diff hist 7,817 bytes Documentation →Generic options
- 16:3316:33, 13 April 2012 diff hist 8,659 bytes Documentation →Compilation options
- 16:3216:32, 13 April 2012 diff hist 8,901 bytes Documentation →Generic options
- 16:2616:26, 13 April 2012 diff hist 8,906 bytes Documentation →Output files
- 16:2416:24, 13 April 2012 diff hist 948 bytes Main Page No edit summary
- 16:2316:23, 13 April 2012 diff hist 955 bytes Main Page No edit summary
- 16:2216:22, 13 April 2012 diff hist 992 bytes Main Page No edit summary
- 16:2216:22, 13 April 2012 diff hist 987 bytes Main Page No edit summary
- 16:1916:19, 13 April 2012 diff hist 8,713 bytes Documentation →Simulation options
- 16:1916:19, 13 April 2012 diff hist 287 bytes Model introduction New page: The model is discussed in detail in: T.E. Ouldridge, A.A. Louis and J.P.K. Doye, J. Chem. Phys, 134, 085101 (2011) [http://link.aip.org/link/?JCP/134/085101 Structural, mechanical and the...
- 16:1716:17, 13 April 2012 diff hist 8,743 bytes Documentation No edit summary
- 16:1616:16, 13 April 2012 diff hist 862 bytes Main Page No edit summary
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- 16:0916:09, 13 April 2012 diff hist 1,871 bytes Template:Ombox/core New page: <table class="plainlinks ombox {{#ifeq:{{{small}}}|yes|mbox-small}} {{#switch:{{{type|}}} | speedy = ombox-speedy | delete = ombox-delete | content = ombox-content | style ...
- 16:0916:09, 13 April 2012 diff hist 723 bytes Template:Ombox New page: {{#ifeq:{{{small|}}}|yes | {{ombox/core | small = yes | type = {{{type|}}} | image = {{#if:{{{smallimage|}}}| {{{smallimage}}} | {{{image|}}} }} | imageright = {{#if:{{{smallimage...
- 16:0916:09, 13 April 2012 diff hist 5,927 bytes Template:Loop New page: <includeonly><!-- -->{{#ifexpr:{{{1}}}>000|{{{2}}}}}<!-- -->{{#ifexpr:{{{1}}}>001|{{{2}}}}}<!-- -->{{#ifexpr:{{{1}}}>002|{{{2}}}}}<!-- -->{{#ifexpr:{{{1}}}>003|{{{2}}}}}<!-- -->{{#ifexpr:{...
- 16:0816:08, 13 April 2012 diff hist 1,070 bytes Template:Template sandbox notice New page: {{#ifexpr:0<noinclude>1</noinclude>+{{#ifeq:{{lc:{{SUBPAGENAME}}}}|{{lc:{{{subpage-name|sandbox}}}}} |1 |0 }} |{{ombox |image = 50px|alt=|link= |text = This...
- 16:0716:07, 13 April 2012 diff hist 2,382 bytes Template:Documentation New page: <!-- Automatically add {{template sandbox notice}} when on a /sandbox page. -->{{#ifeq: {{SUBPAGENAME}} | sandbox | <div style="clear: both;"></div>{{template sandbox notice|{{{livepage|...
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- 16:0616:06, 13 April 2012 diff hist 5,050 bytes Template:Citation/identifier New page: {{#switch:{{{identifier}}} |arxiv={{hide in print |arXiv:[http://arxiv.org/abs/{{{input1|}}} {{#tag:nowiki|{{{input1|}}}}}] }}<!-- -->{{only in print |a...
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- 15:5615:56, 13 April 2012 diff hist 840 bytes Main Page No edit summary
- 15:5315:53, 13 April 2012 diff hist 8,735 bytes Documentation →Compilation options
- 15:5215:52, 13 April 2012 diff hist 8,712 bytes Documentation No edit summary
- 15:4215:42, 13 April 2012 diff hist 8,709 bytes Documentation New page: BLA BLA Documentation introduction ==MAKE OPTIONS== To compile oxDNA you have to change the first rows in the makefile to match your CUDA installation and to specify the architecture (64...
- 15:1115:11, 13 April 2012 diff hist 481 bytes Main Page No edit summary
- 15:0015:00, 13 April 2012 diff hist 512 bytes Main Page No edit summary