Search results

...varies depending on the design. It may be necessary to use some trial and error experimentation. As well as changing parameters, options include modifying

The program outputs some debugging information to the standard error and information regarding the interaction energies to the standard output. ...resent. If the file has the wrong syntax, oxDNA should spit out a sensible error message while parsing the file.

...e the energy from scratch, compare it with the current energy and throw an error if the difference is larger then check_energy_threshold. Defaults to 10.