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17 March 2014
- 18:4118:41, 17 March 2014 diff hist +3,795 N DNA model introduction Created page with "The model treats DNA as a string of rigid nucleotides, which interact through potentials which depend on the position and orientation of the nucleotides. The interactions are: #S…"
- 18:4018:40, 17 March 2014 diff hist +30 Main Page No edit summary
- 18:3918:39, 17 March 2014 diff hist +6,067 N RNA model introduction Created page with "===Description of the oxRNA model=== The RNA model, oxRNA, treats each RNA nucleotide as a single rigid body with multiple interaction sites, following the coarse-graining approa…"
- 18:3818:38, 17 March 2014 diff hist −43 Features of the previous version No edit summary
- 18:3718:37, 17 March 2014 diff hist +4 Publications No edit summary
- 18:3618:36, 17 March 2014 diff hist +24 Main Page No edit summary
- 18:3618:36, 17 March 2014 diff hist +2,778 N Previous version Created page with " In this section, we outline the procedure for compiling the previously released (2012) version of oxDNA simulation code. This version is no longer developed or supported, but th…"
11 March 2014
- 16:5116:51, 11 March 2014 diff hist 0 Model introduction →Simulation units
- 16:5016:50, 11 March 2014 diff hist 0 Model introduction No edit summary
- 16:4116:41, 11 March 2014 diff hist +4 RNA duplex melting →Introduction
- 16:4116:41, 11 March 2014 diff hist 0 RNA duplex melting →Introduction
- 16:4116:41, 11 March 2014 diff hist 0 RNA duplex melting No edit summary
- 16:4116:41, 11 March 2014 diff hist −46 RNA duplex melting No edit summary
- 16:4016:40, 11 March 2014 diff hist +23 N File:Melting.png Melting of an RNA 8-mer current
- 16:2016:20, 11 March 2014 diff hist +6 RNA duplex melting →Introduction
- 16:1916:19, 11 March 2014 diff hist 0 RNA duplex melting →Introduction
- 16:1916:19, 11 March 2014 diff hist +112 RNA duplex melting →Introduction
- 15:5115:51, 11 March 2014 diff hist −1 RNA duplex melting No edit summary
- 15:5115:51, 11 March 2014 diff hist +26 RNA duplex melting →Introduction
- 15:5015:50, 11 March 2014 diff hist 0 N File:Arrow.png No edit summary current
- 15:4715:47, 11 March 2014 diff hist 0 RNA duplex melting No edit summary
- 15:4715:47, 11 March 2014 diff hist +33 RNA duplex melting No edit summary
- 15:4615:46, 11 March 2014 diff hist +2 RNA duplex melting →Introduction
- 15:4615:46, 11 March 2014 diff hist +17 RNA duplex melting →Introduction
- 15:4515:45, 11 March 2014 diff hist +30 N File:RNA8M.png An image of a melted RNA 8-mer current
- 15:4415:44, 11 March 2014 diff hist +18 N File:RNA8D.png A formed RNA 8-mer current
- 15:3615:36, 11 March 2014 diff hist +37 N File:Image 8.png A formed RNA duplex with 8 base pairs current
- 15:3515:35, 11 March 2014 diff hist +30 N File:Image melt.png An image of a melted RNA 8-mer current
- 15:2415:24, 11 March 2014 diff hist +1 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:2415:24, 11 March 2014 diff hist +7 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:2315:23, 11 March 2014 diff hist +5 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:1915:19, 11 March 2014 diff hist +1 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:1915:19, 11 March 2014 diff hist −8 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:1815:18, 11 March 2014 diff hist +6 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:1815:18, 11 March 2014 diff hist −15 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:1815:18, 11 March 2014 diff hist +133 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:1615:16, 11 March 2014 diff hist +2 RNA duplex melting →Data evaluation and estimation of the melting temperature
- 15:1515:15, 11 March 2014 diff hist +1 RNA duplex melting →Setting the order parameters and weights
- 15:1315:13, 11 March 2014 diff hist +286 RNA duplex melting No edit summary
- 14:5914:59, 11 March 2014 diff hist +2 RNA model →Running simulation with the oxRNA model
- 14:1114:11, 11 March 2014 diff hist 0 RNA model →Running simulation with the oxRNA model
- 14:1014:10, 11 March 2014 diff hist +277 RNA model No edit summary
- 13:5713:57, 11 March 2014 diff hist +501 RNA duplex melting No edit summary
- 13:5113:51, 11 March 2014 diff hist +62 RNA duplex melting No edit summary
- 13:5013:50, 11 March 2014 diff hist +1,067 RNA duplex melting No edit summary
- 13:1613:16, 11 March 2014 diff hist +858 RNA duplex melting No edit summary
- 13:0113:01, 11 March 2014 diff hist +2,224 RNA duplex melting No edit summary
10 March 2014
- 20:1120:11, 10 March 2014 diff hist +9 RNA duplex melting No edit summary
- 19:5719:57, 10 March 2014 diff hist +2,548 RNA duplex melting No edit summary
- 19:0919:09, 10 March 2014 diff hist −3 RNA model No edit summary
- 19:0819:08, 10 March 2014 diff hist +4 RNA model No edit summary
- 19:0719:07, 10 March 2014 diff hist −24 RNA model No edit summary
- 19:0619:06, 10 March 2014 diff hist +3 RNA model No edit summary
- 19:0519:05, 10 March 2014 diff hist −1 RNA model No edit summary
- 19:0419:04, 10 March 2014 diff hist −14 RNA model No edit summary
- 19:0419:04, 10 March 2014 diff hist +1 RNA model No edit summary
- 19:0219:02, 10 March 2014 diff hist +59 RNA model No edit summary
- 19:0019:00, 10 March 2014 diff hist +40 RNA model No edit summary
- 18:5818:58, 10 March 2014 diff hist +1,806 RNA model No edit summary
- 17:4017:40, 10 March 2014 diff hist −19 RNA model No edit summary
- 17:3817:38, 10 March 2014 diff hist +1,818 RNA model No edit summary
- 13:2413:24, 10 March 2014 diff hist +27 RNA model No edit summary
9 March 2014
- 16:4616:46, 9 March 2014 diff hist +1 RNA duplex melting No edit summary
- 16:4616:46, 9 March 2014 diff hist +22 RNA duplex melting No edit summary
- 16:4216:42, 9 March 2014 diff hist +948 N RNA duplex melting Created page with "==Introduction== This example shows how our code can be used to calculate melting temperature of an RNA duplex (8-mer) using the Virtual Move Monte Carlo (VMMC) algorithm. The c…"
6 March 2014
- 18:0918:09, 6 March 2014 diff hist −1 RNA model No edit summary
- 18:0818:08, 6 March 2014 diff hist +2,000 N RNA model Created page with "The RNA model, oxRNA, treats each RNA nucleotide as a single rigid body with multiple interaction sites, following the coarse-graining apporach adopted for the DNA model. The nu…"
- 18:0318:03, 6 March 2014 diff hist +59 N File:Image duplex combined annotated.png A schematic illustration of interactions in the oxRNA model current
20 January 2014
- 12:5712:57, 20 January 2014 diff hist +331 Publications No edit summary
13 November 2013
- 16:2216:22, 13 November 2013 diff hist +101 Publications No edit summary
19 October 2013
- 14:0014:00, 19 October 2013 diff hist +12 Main Page No edit summary
- 13:5713:57, 19 October 2013 diff hist +1 Main Page No edit summary
- 13:5713:57, 19 October 2013 diff hist +13 Main Page No edit summary
- 13:5613:56, 19 October 2013 diff hist +6 Main Page No edit summary
- 13:5413:54, 19 October 2013 diff hist +80 Main Page No edit summary
9 September 2013
- 17:1017:10, 9 September 2013 diff hist +332 Publications No edit summary
2 September 2013
- 22:0622:06, 2 September 2013 diff hist +2 Publications No edit summary
- 22:0522:05, 2 September 2013 diff hist +83 Publications No edit summary
22 August 2013
- 22:3422:34, 22 August 2013 diff hist +13 Publications No edit summary
- 22:3322:33, 22 August 2013 diff hist +249 Publications No edit summary
- 22:3022:30, 22 August 2013 diff hist +86 Publications No edit summary
19 July 2013
- 05:2705:27, 19 July 2013 diff hist −41 Features of the previous version →Experimental (Unsupported) features
5 April 2013
- 13:0713:07, 5 April 2013 diff hist −36 Contact information No edit summary
- 13:0613:06, 5 April 2013 diff hist +36 Contact information No edit summary
- 13:0413:04, 5 April 2013 diff hist −26 Contact information No edit summary
- 13:0413:04, 5 April 2013 diff hist −5 Contact information No edit summary
- 13:0313:03, 5 April 2013 diff hist +31 Contact information No edit summary
15 March 2013
- 13:3313:33, 15 March 2013 diff hist +204 Publications No edit summary
5 March 2013
- 13:1613:16, 5 March 2013 diff hist +4 Documentation →pdb format
20 December 2012
- 12:1612:16, 20 December 2012 diff hist 2,245 bytes Publications No edit summary
12 December 2012
- 14:5314:53, 12 December 2012 diff hist 24,357 bytes Documentation →String
- 14:5214:52, 12 December 2012 diff hist 24,359 bytes Documentation →Repulsion plane
- 14:5114:51, 12 December 2012 diff hist 24,358 bytes Documentation →Repulsion plane
2 October 2012
- 10:5310:53, 2 October 2012 diff hist 3,768 bytes Model introduction No edit summary
- 10:5210:52, 2 October 2012 diff hist 3,653 bytes Model introduction No edit summary
11 September 2012
- 19:0919:09, 11 September 2012 diff hist 1,746 bytes Main Page →Acknowledgments
7 September 2012
- 00:0600:06, 7 September 2012 diff hist 24,441 bytes Documentation →Generation of initial configurations
- 00:0600:06, 7 September 2012 diff hist 24,445 bytes Documentation →Generation of initial configurations
23 July 2012
- 18:3518:35, 23 July 2012 diff hist 3,739 bytes Model introduction No edit summary
- 18:3418:34, 23 July 2012 diff hist 3,546 bytes Model introduction No edit summary